CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Saccharophagus degradans 2-40
 

Saccharophagus degradans 2-40

Genome
 

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Total size (bp) 5057531
G + C content (%) 45.82
Coding sequences 4007
Coding density (%) 86.7
Average gene length (bp) 1094
Histidine domain Logo
Mean spacer hisKA - HATPase domains 39
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 132
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
60 31 3 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (63 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 45
Histidine Kinase, Hybrid 10
Histidine Kinase, Unorthodox 4
Histidine Kinase, CheA 4
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (66) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family CheV Family RsbU Family PleD_VieA Family PleD Family VieA Family CheY Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family CheV Family RsbU Family PleD_VieA Family PleD Family VieA Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 3
CheC 0CheV 1CheY 11CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 5MerR 0NarL 4
NtrC 8OmpR 12PglZ 0PilB 0PleD 5
PleD_VieA 2PrrA 1RpfG 0RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 2VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 11
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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Date : 28 April 2024, 1:21:38 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales