CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Runella slithyformis DSM 19594
 

Runella slithyformis DSM 19594

Genome
 

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Total size (bp) 6568739
G + C content (%) 46.59
Coding sequences 5458
Coding density (%) 87.23
Average gene length (bp) 1050
Histidine domain Logo
Mean spacer hisKA - HATPase domains 39
Min spacer hisKA - HATPase domains 13
Max spacer hisKA - HATPase domains 81
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
87 28 3 2 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (67 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox Classic Hybrid Unorthodox
Histidine Kinase, Classic 54
Histidine Kinase, Hybrid 11
Histidine Kinase, Unorthodox 2
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (74) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family CyC-C Family LytTR Family YesN Family CheY Family PglZ Family unclassified Family NtrC Family OmpR Family NarL Family CyC-C Family LytTR Family YesN Family CheY Family PglZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 16CitT 0CsrA 0
CyC-C 1FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 30MerR 0NarL 6
NtrC 5OmpR 10PglZ 1PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 2unclassified 3
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(18)
HisKa 17
Hpt 1

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Date : 27 April 2024, 20:56:22 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales