CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Roseiflexus sp. RS-1
 

Roseiflexus sp. RS-1

Genome
 

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Total size (bp) 5801598
G + C content (%) 60.39
Coding sequences 4517
Coding density (%) 85.11
Average gene length (bp) 1093
Histidine domain Logo
Mean spacer hisKA - HATPase domains 47
Min spacer hisKA - HATPase domains 23
Max spacer hisKA - HATPase domains 146
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
72 25 4 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (60 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 45
Histidine Kinase, Hybrid 13
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (72) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family CyC-C Family CheB Family RpfG Family RsbU Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family unclassified Family OmpR Family NarL Family CyC-C Family CheB Family RpfG Family RsbU Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 2ArsR 0BetR 0CheB 2
CheC 0CheV 0CheY 17CitT 0CsrA 0
CyC-C 1FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 12
NtrC 0OmpR 19PglZ 0PilB 0PleD 2
PleD_VieA 3PrrA 0RpfG 2RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 11
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(1)
HisKa 1
Hpt 0

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Date : 27 April 2024, 15:23:21 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales