CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Roseburia intestinalis M50/1
 

Roseburia intestinalis M50/1

Genome
 

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Total size (bp) 4143550
G + C content (%) 41.56
Coding sequences 3461
Coding density (%) 76.12
Average gene length (bp) 911
Histidine domain Logo
Mean spacer hisKA - HATPase domains 28
Min spacer hisKA - HATPase domains 4
Max spacer hisKA - HATPase domains 52
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
29 31 2 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (44 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 37
Histidine Kinase, Hybrid 5
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (50) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family CheY Family unclassified Family OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 0CheV 1CheY 2CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 12MerR 0NarL 1
NtrC 0OmpR 18PglZ 0PilB 0PleD 1
PleD_VieA 2PrrA 0RpfG 1RsbU 0Sarp 0
Spo0A 1TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 8unclassified 2
misPredicted TCS proteins (16)
misPredicted Histidine Kinase 6
misPredicted Response Regulator 9
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(3)
HisKa 1
Hpt 2

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Date : 28 April 2024, 0:40:22 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales