CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Roseburia intestinalis XB6B4
 

Roseburia intestinalis XB6B4

Genome
 

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Total size (bp) 4286292
G + C content (%) 41.46
Coding sequences 3609
Coding density (%) 75.63
Average gene length (bp) 898
Histidine domain Logo
Mean spacer hisKA - HATPase domains 28
Min spacer hisKA - HATPase domains 4
Max spacer hisKA - HATPase domains 52
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
45 21 2 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (42 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 34
Histidine Kinase, Hybrid 6
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (49) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family CheY Family unclassified Family OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 0CheV 1CheY 3CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 9MerR 0NarL 1
NtrC 0OmpR 16PglZ 0PilB 0PleD 1
PleD_VieA 2PrrA 0RpfG 1RsbU 0Sarp 0
Spo0A 1TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 8unclassified 5
misPredicted TCS proteins (27)
misPredicted Histidine Kinase 13
misPredicted Response Regulator 13
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(2)
HisKa 1
Hpt 1

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Date : 28 April 2024, 1:19:03 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales