CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Roseburia hominis A2-183
 

Roseburia hominis A2-183

Genome
 

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Total size (bp) 3592125
G + C content (%) 48.5
Coding sequences 3362
Coding density (%) 88.48
Average gene length (bp) 945
Histidine domain Logo
Mean spacer hisKA - HATPase domains 38
Min spacer hisKA - HATPase domains 12
Max spacer hisKA - HATPase domains 52
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
19 38 0 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (43 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 37
Histidine Kinase, Hybrid 4
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (50) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family RpfG Family CheV Family PleD_VieA Family CheY Family FrzZ Family unclassified Family OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family RpfG Family CheV Family PleD_VieA Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 0CheV 1CheY 2CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 3MerR 0NarL 2
NtrC 0OmpR 26PglZ 0PilB 0PleD 0
PleD_VieA 2PrrA 0RpfG 1RsbU 0Sarp 0
Spo0A 1TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 7unclassified 3
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(2)
HisKa 0
Hpt 2

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Date : 27 April 2024, 15:27:52 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales