CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Rhodopseudomonas palustris DX-1
 

Rhodopseudomonas palustris DX-1

Genome
 

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Total size (bp) 5404117
G + C content (%) 65.44
Coding sequences 4917
Coding density (%) 86.65
Average gene length (bp) 952
Histidine domain Logo
Mean spacer hisKA - HATPase domains 37
Min spacer hisKA - HATPase domains 17
Max spacer hisKA - HATPase domains 60
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
58 16 4 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (49 + 4) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 32
Histidine Kinase, Hybrid 13
Histidine Kinase, Unorthodox 2
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 4
P2CS Predicted Response Regulators (52) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family CheB Family RpfG Family AmiR_NasR Family PleD Family VieA Family CheY Family FrzZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family CheB Family RpfG Family AmiR_NasR Family PleD Family VieA Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 2
CheC 0CheV 0CheY 15CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 6
NtrC 5OmpR 14PglZ 0PilB 0PleD 1
PleD_VieA 0PrrA 1RpfG 2RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 1VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 3
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(4)
HisKa 2
Hpt 2

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Date : 27 April 2024, 18:55:41 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales