CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Rhodoferax ferrireducens T118
 

Rhodoferax ferrireducens T118

Genome
 

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Total size (bp) 4712337
G + C content (%) 59.88
Coding sequences 4169
Coding density (%) 89.83
Average gene length (bp) 1015
Histidine domain Logo
Mean spacer hisKA - HATPase domains 45
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 123
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
32 47 2 0 Pentad 1
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (60 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 47
Histidine Kinase, Hybrid 8
Histidine Kinase, Unorthodox 2
Histidine Kinase, CheA 3
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (77) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 2
CheC 0CheV 1CheY 12CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 2MerR 0NarL 16
NtrC 11OmpR 15PglZ 0PilB 0PleD 1
PleD_VieA 6PrrA 1RpfG 1RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 8
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

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Date : 27 April 2024, 19:55:02 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales