CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Rhodobacter capsulatus SB 1003
 

Rhodobacter capsulatus SB 1003

Genome
 

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Total size (bp) 3738958
G + C content (%) 66.56
Coding sequences 3493
Coding density (%) 90.45
Average gene length (bp) 968
Histidine domain Logo
Mean spacer hisKA - HATPase domains 44
Min spacer hisKA - HATPase domains 16
Max spacer hisKA - HATPase domains 56
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
39 14 0 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (32 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 22
Histidine Kinase, Hybrid 6
Histidine Kinase, Unorthodox 2
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (38) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family YesN Family CheB Family RsbU Family PleD_VieA Family PleD Family CheY Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family YesN Family CheB Family RsbU Family PleD_VieA Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 2
CheC 0CheV 0CheY 6CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 4
NtrC 5OmpR 12PglZ 0PilB 0PleD 1
PleD_VieA 1PrrA 2RpfG 0RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 1unclassified 3
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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Date : 27 April 2024, 22:28:31 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales