CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Rhodopirellula baltica SH 1
 

Rhodopirellula baltica SH 1

Genome
 

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Total size (bp) 7145576
G + C content (%) 55.41
Coding sequences 7324
Coding density (%) 97.11
Average gene length (bp) 947
Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 40
Max spacer hisKA - HATPase domains 88
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
76 11 1 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (47 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox Classic Hybrid Unorthodox
Histidine Kinase, Classic 29
Histidine Kinase, Hybrid 13
Histidine Kinase, Unorthodox 5
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (56) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family RpfG Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family CsrA Family FrzZ Family MerR Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family RpfG Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family CsrA Family FrzZ Family MerR Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 18CitT 0CsrA 1
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 1NarL 4
NtrC 10OmpR 4PglZ 0PilB 0PleD 2
PleD_VieA 2PrrA 1RpfG 1RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 10
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(2)
HisKa 1
Hpt 1

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Date : 27 April 2024, 20:39:21 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales