CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Rhizobium sp. IRBG74
 

Rhizobium sp. IRBG74

Genome
 

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Total size (bp) 2035452
G + C content (%) 59.28
Coding sequences 1921
Coding density (%) 90.49
Average gene length (bp) 959
Histidine domain Logo
Mean spacer hisKA - HATPase domains 37
Min spacer hisKA - HATPase domains 23
Max spacer hisKA - HATPase domains 49
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
9 10 1 0 Heptad 1
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (15 + 4) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 13
Histidine Kinase, Hybrid 2
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 4
P2CS Predicted Response Regulators (21) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family AmiR_NasR Family CheY Family unclassified Family NtrC Family OmpR Family NarL Family AmiR_NasR Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 7CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 3
NtrC 2OmpR 6PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 2
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(1)
HisKa 1
Hpt 0

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Date : 26 April 2024, 14:14:02 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales