CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Rhizobium etli CFN 42
 

Rhizobium etli CFN 42

Genome
 

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Total size (bp) 4381608
G + C content (%) 61.28
Coding sequences 4031
Coding density (%) 86.07
Average gene length (bp) 936
Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 24
Max spacer hisKA - HATPase domains 53
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
42 19 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (35 + 2) - Phylogenetic Tree - Data Heatmap
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 26
Histidine Kinase, Hybrid 7
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 2
P2CS Predicted Response Regulators (45) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family CheB Family AmiR_NasR Family PleD Family CheY Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family CheB Family AmiR_NasR Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 2
CheC 0CheV 0CheY 13CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 4
NtrC 5OmpR 12PglZ 0PilB 0PleD 2
PleD_VieA 0PrrA 1RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 5
misPredicted TCS proteins (2)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 1
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(2)
HisKa 1
Hpt 1

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Date : 27 April 2024, 19:00:16 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales