CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Pseudomonas stutzeri ATCC 17588 = LMG 11199
 

Pseudomonas stutzeri ATCC 17588 = LMG 11199

Genome
 

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Total size (bp) 4547930
G + C content (%) 63.93
Coding sequences 4217
Coding density (%) 88.06
Average gene length (bp) 950
Histidine domain Logo
Mean spacer hisKA - HATPase domains 43
Min spacer hisKA - HATPase domains 4
Max spacer hisKA - HATPase domains 59
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
43 30 1 0 Heptad 1
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (59 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 37
Histidine Kinase, Hybrid 21
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (53) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family PleD_VieA Family PleD Family CitT Family CheY Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family PleD_VieA Family PleD Family CitT Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 1
CheC 0CheV 2CheY 9CitT 1CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 5
NtrC 5OmpR 15PglZ 0PilB 0PleD 3
PleD_VieA 2PrrA 3RpfG 1RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 3
misPredicted TCS proteins (4)
misPredicted Histidine Kinase 2
misPredicted Response Regulator 2
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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Date : 27 April 2024, 20:04:26 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales