CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Pseudomonas sp. TKP
 

Pseudomonas sp. TKP

Genome
 

Enlarge Image - Zoomable Map
Total size (bp) 7012672
G + C content (%) 60.49
Coding sequences 6297
Coding density (%) 88.52
Average gene length (bp) 986
Histidine domain Logo
Mean spacer hisKA - HATPase domains 46
Min spacer hisKA - HATPase domains 37
Max spacer hisKA - HATPase domains 134
Quick Search
Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
61 52 4 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (80 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 56
Histidine Kinase, Hybrid 16
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 5
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (96) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 4
CheC 0CheV 4CheY 13CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 17
NtrC 7OmpR 36PglZ 0PilB 0PleD 2
PleD_VieA 2PrrA 1RpfG 2RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 5
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 1
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

Locations of visitors to this page
Date : 27 April 2024, 20:26:12 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales