CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Pseudomonas mendocina NK-01
 

Pseudomonas mendocina NK-01

Genome
 

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Total size (bp) 5434353
G + C content (%) 62.5
Coding sequences 4958
Coding density (%) 88.7
Average gene length (bp) 972
Histidine domain Logo
Mean spacer hisKA - HATPase domains 44
Min spacer hisKA - HATPase domains 7
Max spacer hisKA - HATPase domains 134
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
45 34 2 0 Hexad1
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (59 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 36
Histidine Kinase, Hybrid 17
Histidine Kinase, Unorthodox 2
Histidine Kinase, CheA 4
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (65) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family FrzZ Family CheC Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family FrzZ Family CheC Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 3
CheC 1CheV 3CheY 6CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 9
NtrC 6OmpR 16PglZ 0PilB 0PleD 5
PleD_VieA 2PrrA 2RpfG 4RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 1unclassified 3
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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Date : 27 April 2024, 18:47:57 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales