CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Pseudomonas fluorescens F113
 

Pseudomonas fluorescens F113

Genome
 

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Total size (bp) 6845832
G + C content (%) 60.78
Coding sequences 5862
Coding density (%) 86.85
Average gene length (bp) 1014
Histidine domain Logo
Mean spacer hisKA - HATPase domains 43
Min spacer hisKA - HATPase domains 37
Max spacer hisKA - HATPase domains 134
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
66 48 4 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (83 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 52
Histidine Kinase, Hybrid 23
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 5
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (93) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 4
CheC 0CheV 3CheY 12CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 19
NtrC 7OmpR 26PglZ 0PilB 0PleD 2
PleD_VieA 3PrrA 1RpfG 3RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 2unclassified 8
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 1
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(2)
HisKa 1
Hpt 1

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Date : 28 April 2024, 1:55:33 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales