Pseudomonas brassicacearum subsp. brassicacearum NFM421

Genome   Enlarge Image - Zoomable Map Total size (bp) 6843248 G + C content (%) 60.79 Coding sequences 6095 Coding density (%) 88.24 Average gene length (bp) 991 Histidine domain Logo Mean spacer hisKA - HATPase domains 43 Min spacer hisKA - HATPase domains 37 Max spacer hisKA - HATPase domains 134 Quick Search Gene list (separated by carriage return) Locus-tag Gene name GI Domain description 2CSK_N AAA AAA_3 AAA_5 ACT Ada_Zn_bindi AlkA_N Aminotran_1_ ANTAR AP2 AraC_binding Arc Arch_ATPase Arg_represso AsnC_trans_r Autoind_bind B12-binding BetR BLUF BTAD Cache_1 Cache_2 CBS CHASE CHASE2 CHASE3 CHASE4 CheB_methyle CheC CheD CheR CheR_N CheW CheZ Citrate_synt cNMP cNMP_binding CodY ComK Crl Crp CSD CsrA CtsR Cyanate_lyas CYCc DeoR Diacid_rec DJ-1_PfpI DUF1 DUF2 DUF24 DUF387 EAL EPSP_synthas ExsB FeoA Fer4 FeS Fe_dep_repre Fe_dep_repr_ FHA FlhC FlhD FmdA_AmdA FUR GAF GATase_2 GerE GGDEF Glucokinase Glycos_trans Glyoxalase GntR GreA_GreB GSPII_E GSPII_E_N Guanylate_cy GutM H-kinase_dim HalX HAMP HATPase_c HD HDOD HEAT_PBS HEM4 Hemerythrin HhH-GPD HisKA HisKA_2 HisKA_3 Histone_HNS His_kinase HMA HNOB Hpt HrcA HTH_1 HTH_10 HTH_11 HTH_12 HTH_3 HTH_5 HTH_6 HTH_7 HTH_8 HTH_AraC HTH_CodY HTH_DeoR HTH_DTXR HTH_IclR HTH_LUXR HTH_Mga HTH_XRE HutP HWE_HK IclR Kdo LacI LexA_DNA_bin LysR_substra LytR_cpsA_ps LytTR MA MarR MASE1 MASE2 MCPsignal MecA MerR MerR-DNA-bin MetJ MeTrc Mga MHYT MtlR NIR_SIR NIR_SIR_ferr NIT Nitroreducta Nitro_FeMo-C NTP_transf_2 NUDIX PAC PadR PALP PAS PAS_2 PAS_3 PAS_4 PBPb Pencillinase Peptidase_M2 Peripla_BP_1 Peripla_BP_2 peroxidase PfkB PglZ Phage_AlpA PhoU Phytochrome PIG-L PilZ Pkinase Pkinase_Tyr PP2C_SIG PRD Pribosyltran PrpR_N PTS-HPr PTS_EIIC PucR PuR_N Put_DNA-bind Pyr_redox REC Response_reg Rhodanese ROK ROS_MUCR Rrf2 RseA_N RtcR SBP_bac_1 SBP_bac_3 SBP_bac_5 SBP_bac_7 SBP_bac_9 SfsA Sigma54_DBD Sigma70_r2 Sigma70_r4 SinI SIS SKI Spo0A_C SpoIIE SpoVT_AbrB STAS Sugar-bind S_TKc TetR_C TetR_N TipAS TOBE TPR_1 TPR_2 TPR_3 TPR_4 Trans_reg_C TrkA_C TrmB TrpBP Trp_represso TyrKc UTRA V4R Whib XylR_N YcbB Cross-talk TCS Organization Orphan Pair Triad Tetrad Pentad+ 67 50 2 2 0 Partnership View

TCSs export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta) P2CS Predicted Histidine Kinases (87 + 1) - Phylogenetic Tree - Data Heatmap Histidine Kinase, Classic 56 Histidine Kinase, Hybrid 23 Histidine Kinase, Unorthodox 3 Histidine Kinase, CheA 5 Possible incomplete Histidine Kinase 1 P2CS Predicted Response Regulators (92) - Phylogenetic Tree - Data Heatmap AlpA 0 AmiR_NasR 1 ArsR 0 BetR 0 CheB 3 CheC 0 CheV 3 CheY 13 CitT 0 CsrA 0 CyC-C 0 FrzZ 0 HalX 0 HxlR 0 IclR 0 LmbE 0 LysR 0 LytTR 1 MerR 0 NarL 20 NtrC 7 OmpR 27 PglZ 0 PilB 0 PleD 2 PleD_VieA 3 PrrA 1 RpfG 3 RsbU 1 Sarp 0 Spo0A 0 TrxB 0 VieA 0 VieB 0 WcaA 0 Xre 0 YcbB 0 YesN 1 unclassified 6 misPredicted TCS proteins (0) misPredicted Histidine Kinase 0 misPredicted Response Regulator 0 misPredicted Phosphotransfer Protein 0 Phosphotransfer Proteins(2) HisKa 1 Hpt 1