CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Polaribacter sp. MED152
 

Polaribacter sp. MED152

Genome
 

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Total size (bp) 2961474
G + C content (%) 30.59
Coding sequences 2635
Coding density (%) 93.05
Average gene length (bp) 1046
Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 18
Max spacer hisKA - HATPase domains 51
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
30 11 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (23 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 18
Histidine Kinase, Hybrid 5
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (26) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family LytTR Family CheY Family PglZ Family unclassified Family OmpR Family NarL Family LytTR Family CheY Family PglZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 7CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 8MerR 0NarL 4
NtrC 0OmpR 3PglZ 1PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 3
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(5)
HisKa 3
Hpt 2

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Date : 28 April 2024, 0:13:33 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales