CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Pandoraea sp. RB-44
 

Pandoraea sp. RB-44

Genome
 

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Total size (bp) 5385252
G + C content (%) 64.89
Coding sequences 4781
Coding density (%) 85.37
Average gene length (bp) 962
Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 56
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
24 26 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (36 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 29
Histidine Kinase, Hybrid 3
Histidine Kinase, Unorthodox 2
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (43) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family AmiR_NasR Family PleD Family CheY Family BetR Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family AmiR_NasR Family PleD Family CheY Family BetR Family
AlpA 0AmiR_NasR 1ArsR 0BetR 1CheB 2
CheC 0CheV 0CheY 4CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 12
NtrC 3OmpR 15PglZ 0PilB 0PleD 1
PleD_VieA 0PrrA 2RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 1unclassified 0
misPredicted TCS proteins (2)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 2
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

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Date : 27 April 2024, 16:05:14 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales