CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Octadecabacter antarcticus 307
 

Octadecabacter antarcticus 307

Genome
 

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Total size (bp) 4812600
G + C content (%) 54.64
Coding sequences 4435
Coding density (%) 80.27
Average gene length (bp) 871
Histidine domain Logo
Mean spacer hisKA - HATPase domains 46
Min spacer hisKA - HATPase domains 41
Max spacer hisKA - HATPase domains 56
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
27 6 0 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (17 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox Classic Hybrid Unorthodox
Histidine Kinase, Classic 13
Histidine Kinase, Hybrid 2
Histidine Kinase, Unorthodox 2
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (25) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family RsbU Family AmiR_NasR Family PleD Family CheY Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family RsbU Family AmiR_NasR Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 2ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 2CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 2
NtrC 4OmpR 8PglZ 0PilB 0PleD 1
PleD_VieA 0PrrA 3RpfG 0RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 2
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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Date : 27 April 2024, 18:26:36 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales