CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Oalgarvensis Delta1

Metagenome
 
Total size (bp) 13536737
G + C content (%) 41.57
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 3
Max spacer hisKA - HATPase domains 113
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (90 + 5)
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 44
Histidine Kinase, Hybrid 40
Histidine Kinase, Unorthodox 5
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 5
P2CS Predicted Response Regulators (110)
NtrC Family OmpR Family NarL Family CyC-C Family CheB Family RpfG Family RsbU Family PleD_VieA Family PleD Family CheY Family FrzZ Family MerR Family unclassified Family NtrC Family OmpR Family NarL Family CyC-C Family CheB Family RpfG Family RsbU Family PleD_VieA Family PleD Family CheY Family FrzZ Family MerR Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 0CheV 0CheY 38CitT 0CsrA 0
CyC-C 1FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 1NarL 7
NtrC 19OmpR 8PglZ 0PilB 0PleD 3
PleD_VieA 1PrrA 0RpfG 4RsbU 2Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 24
misPredicted TCS proteins (4)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 2
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(3)
HisKa 2
Hpt 1

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