CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Nocardioides sp. JS614
 

Nocardioides sp. JS614

Genome
 

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Total size (bp) 4985871
G + C content (%) 71.66
Coding sequences 4645
Coding density (%) 91.27
Average gene length (bp) 980
Histidine domain Logo
Mean spacer hisKA - HATPase domains 44
Min spacer hisKA - HATPase domains 16
Max spacer hisKA - HATPase domains 58
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
40 27 0 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (49 + 2) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 41
Histidine Kinase, Hybrid 4
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 2
P2CS Predicted Response Regulators (42) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family LytTR Family CheB Family AmiR_NasR Family PleD_VieA Family CheY Family unclassified Family OmpR Family NarL Family LytTR Family CheB Family AmiR_NasR Family PleD_VieA Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 1
CheC 0CheV 0CheY 3CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 12
NtrC 0OmpR 21PglZ 0PilB 0PleD 0
PleD_VieA 1PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 2
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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Date : 27 April 2024, 21:32:57 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales