CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Nocardiopsis alba ATCC BAA-2165
 

Nocardiopsis alba ATCC BAA-2165

Genome
 

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Total size (bp) 5848211
G + C content (%) 69.65
Coding sequences 5508
Coding density (%) 86.26
Average gene length (bp) 916
Histidine domain Logo
Mean spacer hisKA - HATPase domains 33
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 56
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
37 30 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (52 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 51
Histidine Kinase, Hybrid 1
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (46) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family RsbU Family AmiR_NasR Family CheY Family unclassified Family OmpR Family NarL Family RsbU Family AmiR_NasR Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 2CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 27
NtrC 0OmpR 11PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 4
misPredicted TCS proteins (2)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 1
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(2)
HisKa 2
Hpt 0

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Date : 28 April 2024, 1:17:11 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales