CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Nitrosococcus halophilus Nc4
 

Nitrosococcus halophilus Nc4

Genome
 

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Total size (bp) 4079427
G + C content (%) 51.59
Coding sequences 3749
Coding density (%) 85.82
Average gene length (bp) 934
Histidine domain Logo
Mean spacer hisKA - HATPase domains 45
Min spacer hisKA - HATPase domains 26
Max spacer hisKA - HATPase domains 133
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
24 13 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (25 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 17
Histidine Kinase, Hybrid 6
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (28) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family RpfG Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family unclassified Family NtrC Family OmpR Family NarL Family RpfG Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 6CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 6
NtrC 6OmpR 3PglZ 0PilB 0PleD 1
PleD_VieA 3PrrA 0RpfG 1RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 1
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

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Date : 27 April 2024, 22:02:45 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales