CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Mycobacterium smegmatis JS623
 

Mycobacterium smegmatis JS623

Genome
 

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Total size (bp) 6464916
G + C content (%) 65.07
Coding sequences 6186
Coding density (%) 90.53
Average gene length (bp) 946
Histidine domain Logo
Mean spacer hisKA - HATPase domains 36
Min spacer hisKA - HATPase domains 32
Max spacer hisKA - HATPase domains 184
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
34 14 3 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (36 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 35
Histidine Kinase, Hybrid 1
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (34) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family CyC-C Family RsbU Family AmiR_NasR Family CheY Family TrxB Family unclassified Family OmpR Family NarL Family CyC-C Family RsbU Family AmiR_NasR Family CheY Family TrxB Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 5CitT 0CsrA 0
CyC-C 1FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 11
NtrC 0OmpR 12PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 1Sarp 0
Spo0A 0TrxB 1VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 2
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(1)
HisKa 1
Hpt 0

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Date : 28 April 2024, 1:28:11 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales