CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Methanoregula formicicum SMSP
 

Methanoregula formicicum SMSP

Genome
 

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Total size (bp) 2820858
G + C content (%) 55.2
Coding sequences 2816
Coding density (%) 86.56
Average gene length (bp) 867

Histidine domain Logo
Mean spacer hisKA - HATPase domains 23
Min spacer hisKA - HATPase domains 21
Max spacer hisKA - HATPase domains 54
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
51 7 2 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (50 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 28
Histidine Kinase, Hybrid 20
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (25) - Phylogenetic Tree - Data Heatmap
CheB Family CheY Family unclassified Family CheB Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 0CheV 0CheY 9CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 0
NtrC 0OmpR 0PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 15
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

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