CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Methylobacterium extorquens AM1 plasmid megaplasmid
 

Methylobacterium extorquens AM1 plasmid megaplasmid

Genome
 

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Total size (bp) 1261460
G + C content (%) 67.65
Coding sequences 1162
Coding density (%) 78.53
Average gene length (bp) 853

Histidine domain Logo
Mean spacer hisKA - HATPase domains 45
Min spacer hisKA - HATPase domains 38
Max spacer hisKA - HATPase domains 49
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
11 4 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (10 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox Classic Hybrid Unorthodox
Histidine Kinase, Classic 5
Histidine Kinase, Hybrid 1
Histidine Kinase, Unorthodox 4
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (12) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family RpfG Family CheY Family unclassified Family OmpR Family NarL Family RpfG Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 4CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 1
NtrC 0OmpR 4PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 1RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 2
misPredicted TCS proteins (2)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 1
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

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