CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Leptothrix cholodnii SP-6
 

Leptothrix cholodnii SP-6

Genome
 

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Total size (bp) 4909403
G + C content (%) 68.9
Coding sequences 4363
Coding density (%) 91.98
Average gene length (bp) 1035

Histidine domain Logo
Mean spacer hisKA - HATPase domains 47
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 127
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
48 44 3 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (73 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 44
Histidine Kinase, Hybrid 13
Histidine Kinase, Unorthodox 11
Histidine Kinase, CheA 5
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (74) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family CyC-C Family LytTR Family CheB Family RpfG Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family MerR Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family CyC-C Family LytTR Family CheB Family RpfG Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family MerR Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 4
CheC 0CheV 0CheY 12CitT 0CsrA 0
CyC-C 1FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 1NarL 17
NtrC 7OmpR 17PglZ 0PilB 0PleD 1
PleD_VieA 4PrrA 2RpfG 3RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 3
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 1
Hpt 0

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