CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Lake Washington Methane enrichment

Metagenome
 
Total size (bp) 52164993
G + C content (%) 58.89
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 38
Min spacer hisKA - HATPase domains 3
Max spacer hisKA - HATPase domains 60
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (180 + 117)
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 177
Histidine Kinase, Hybrid 3
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 117
P2CS Predicted Response Regulators (668)
PrrA Family OmpR Family NarL Family CyC-C Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family PleD Family CheY Family FrzZ Family Xre Family unclassified Family PrrA Family OmpR Family NarL Family CyC-C Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family PleD Family CheY Family FrzZ Family Xre Family unclassified Family
AlpA 0AmiR_NasR 3ArsR 0BetR 0CheB 2
CheC 0CheV 9CheY 329CitT 0CsrA 0
CyC-C 2FrzZ 16HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 10MerR 0NarL 35
NtrC 0OmpR 41PglZ 0PilB 0PleD 3
PleD_VieA 0PrrA 6RpfG 2RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 1YcbB 0YesN 0unclassified 208
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(124)
HisKa 99
Hpt 25

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