CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Lake Washington Formate enrichment

Metagenome
 
Total size (bp) 17570569
G + C content (%) 65.78
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 40
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 55
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (45 + 36)
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 40
Histidine Kinase, Hybrid 5
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 36
P2CS Predicted Response Regulators (164)
NtrC Family PrrA Family OmpR Family NarL Family CyC-C Family LytTR Family CheV Family VieA Family CheY Family FrzZ Family MerR Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family CyC-C Family LytTR Family CheV Family VieA Family CheY Family FrzZ Family MerR Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 5CheY 85CitT 0CsrA 0
CyC-C 1FrzZ 2HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 3MerR 1NarL 18
NtrC 1OmpR 18PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 1RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 1VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 28
misPredicted TCS proteins (15)
misPredicted Histidine Kinase 2
misPredicted Response Regulator 11
misPredicted Phosphotransfer Protein 2
Phosphotransfer Proteins(36)
HisKa 30
Hpt 6

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