CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Lake Washington Methylamine enrichment

Metagenome
 
Total size (bp) 37225208
G + C content (%) 52.99
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 41
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 132
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (200 + 65)
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 181
Histidine Kinase, Hybrid 10
Histidine Kinase, Unorthodox 4
Histidine Kinase, CheA 5
Possible incomplete Histidine Kinase 65
P2CS Predicted Response Regulators (473)
NtrC Family PrrA Family OmpR Family NarL Family CyC-C Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family PleD_VieA Family PleD Family VieA Family CheY Family FrzZ Family MerR Family BetR Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family CyC-C Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family PleD_VieA Family PleD Family VieA Family CheY Family FrzZ Family MerR Family BetR Family unclassified Family
AlpA 0AmiR_NasR 6ArsR 0BetR 1CheB 6
CheC 0CheV 2CheY 203CitT 0CsrA 0
CyC-C 1FrzZ 10HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 10MerR 1NarL 32
NtrC 12OmpR 43PglZ 0PilB 0PleD 7
PleD_VieA 9PrrA 9RpfG 11RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 6VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 103
misPredicted TCS proteins (15)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 14
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(98)
HisKa 64
Hpt 34

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