CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Lake Washington Methanol enrichment

Metagenome
 
Total size (bp) 50245961
G + C content (%) 59.45
Coding sequences
Coding density (%) 0
Average gene length (bp) 0
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 20
Max spacer hisKA - HATPase domains 77
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (125 + 98)
Classic Classic
Histidine Kinase, Classic 125
Histidine Kinase, Hybrid 0
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 98
P2CS Predicted Response Regulators (500)
PrrA Family OmpR Family NarL Family CyC-C Family LytTR Family CheB Family RpfG Family CheV Family AmiR_NasR Family PleD Family CheY Family FrzZ Family MerR Family unclassified Family PrrA Family OmpR Family NarL Family CyC-C Family LytTR Family CheB Family RpfG Family CheV Family AmiR_NasR Family PleD Family CheY Family FrzZ Family MerR Family unclassified Family
AlpA 0AmiR_NasR 2ArsR 0BetR 0CheB 2
CheC 0CheV 3CheY 240CitT 0CsrA 0
CyC-C 1FrzZ 13HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 7MerR 2NarL 33
NtrC 0OmpR 31PglZ 0PilB 0PleD 3
PleD_VieA 0PrrA 3RpfG 10RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 150
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(102)
HisKa 81
Hpt 21

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