CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Idiomarina loihiensis L2TR
 

Idiomarina loihiensis L2TR

Genome
 

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Total size (bp) 2839318
G + C content (%) 47.04
Coding sequences 2628
Coding density (%) 92.2
Average gene length (bp) 996

Histidine domain Logo
Mean spacer hisKA - HATPase domains 31
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 53
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
27 15 0 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (26 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 21
Histidine Kinase, Hybrid 3
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (33) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family CheV Family RsbU Family PleD_VieA Family CheY Family FrzZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family CheV Family RsbU Family PleD_VieA Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 0CheV 1CheY 3CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 2MerR 0NarL 5
NtrC 4OmpR 6PglZ 0PilB 0PleD 0
PleD_VieA 1PrrA 1RpfG 0RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 7
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(2)
HisKa 0
Hpt 2

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