CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Hypersaline Mat 08(T)

Metagenome
 
Total size (bp) 8017278
G + C content (%) 56.92
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 47
Min spacer hisKA - HATPase domains 25
Max spacer hisKA - HATPase domains 95
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (26 + 25)
Classic Classic
Histidine Kinase, Classic 26
Histidine Kinase, Hybrid 0
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 25
P2CS Predicted Response Regulators (102)
OmpR Family NarL Family CheV Family AmiR_NasR Family PleD Family CheY Family FrzZ Family unclassified Family OmpR Family NarL Family CheV Family AmiR_NasR Family PleD Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 0
CheC 0CheV 1CheY 48CitT 0CsrA 0
CyC-C 0FrzZ 2HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 1
NtrC 0OmpR 5PglZ 0PilB 0PleD 1
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 43
misPredicted TCS proteins (3)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 3
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(20)
HisKa 20
Hpt 0

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