CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Hypersaline Mat 05(O)

Metagenome
 
Total size (bp) 9803980
G + C content (%) 56.8
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 37
Min spacer hisKA - HATPase domains 27
Max spacer hisKA - HATPase domains 55
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (41 + 35)
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 40
Histidine Kinase, Hybrid 1
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 35
P2CS Predicted Response Regulators (152)
OmpR Family NarL Family CheV Family PleD Family CheY Family FrzZ Family unclassified Family OmpR Family NarL Family CheV Family PleD Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 3CheY 84CitT 0CsrA 0
CyC-C 0FrzZ 3HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 8
NtrC 0OmpR 1PglZ 0PilB 0PleD 1
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 52
misPredicted TCS proteins (10)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 8
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(43)
HisKa 38
Hpt 5

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