CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Hypersaline Mat 03(I)

Metagenome
 
Total size (bp) 8286576
G + C content (%) 51.81
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 37
Min spacer hisKA - HATPase domains 29
Max spacer hisKA - HATPase domains 85
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (45 + 24)
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 44
Histidine Kinase, Hybrid 1
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 24
P2CS Predicted Response Regulators (148)
OmpR Family NarL Family LytTR Family YesN Family CheV Family PleD Family CheY Family FrzZ Family unclassified Family OmpR Family NarL Family LytTR Family YesN Family CheV Family PleD Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 1CheY 91CitT 0CsrA 0
CyC-C 0FrzZ 3HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 1
NtrC 0OmpR 2PglZ 0PilB 0PleD 1
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 1unclassified 47
misPredicted TCS proteins (18)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 16
misPredicted Phosphotransfer Protein 2
Phosphotransfer Proteins(50)
HisKa 38
Hpt 12

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