CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Human Gut Community Subject 7

Metagenome
 
Total size (bp) 15817685
G + C content (%) 49.41
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 35
Min spacer hisKA - HATPase domains 2
Max spacer hisKA - HATPase domains 66
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (74 + 9)
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 63
Histidine Kinase, Hybrid 11
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 9
P2CS Predicted Response Regulators (122)
OmpR Family NarL Family LytTR Family YesN Family RpfG Family AmiR_NasR Family PleD Family CheY Family YcbB Family FrzZ Family unclassified Family OmpR Family NarL Family LytTR Family YesN Family RpfG Family AmiR_NasR Family PleD Family CheY Family YcbB Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 2ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 33CitT 0CsrA 0
CyC-C 0FrzZ 2HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 13MerR 0NarL 13
NtrC 0OmpR 39PglZ 0PilB 0PleD 1
PleD_VieA 0PrrA 0RpfG 1RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 1YesN 4unclassified 13
misPredicted TCS proteins (12)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 5
misPredicted Phosphotransfer Protein 6
Phosphotransfer Proteins(21)
HisKa 20
Hpt 1

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