CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Human Gut Community Subject 8

Metagenome
 
Total size (bp) 20486813
G + C content (%) 43.25
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 36
Min spacer hisKA - HATPase domains 12
Max spacer hisKA - HATPase domains 120
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (143 + 17)
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 132
Histidine Kinase, Hybrid 11
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 17
P2CS Predicted Response Regulators (241)
OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family RpfG Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family FrzZ Family unclassified Family OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family RpfG Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 1
CheC 0CheV 0CheY 63CitT 0CsrA 0
CyC-C 0FrzZ 3HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 27MerR 0NarL 8
NtrC 0OmpR 87PglZ 0PilB 0PleD 3
PleD_VieA 1PrrA 0RpfG 3RsbU 0Sarp 0
Spo0A 1TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 14unclassified 29
misPredicted TCS proteins (8)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 2
misPredicted Phosphotransfer Protein 5
Phosphotransfer Proteins(31)
HisKa 26
Hpt 5

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