CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Herbaspirillum seropedicae SmR1
 

Herbaspirillum seropedicae SmR1

Genome
 

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Total size (bp) 5513887
G + C content (%) 63.41
Coding sequences 4735
Coding density (%) 88.39
Average gene length (bp) 1029

Histidine domain Logo
Mean spacer hisKA - HATPase domains 45
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 118
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
48 42 3 2 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (65 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 46
Histidine Kinase, Hybrid 11
Histidine Kinase, Unorthodox 2
Histidine Kinase, CheA 6
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (83) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family RpfG Family CheV Family PleD Family VieA Family CheY Family MerR Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family RpfG Family CheV Family PleD Family VieA Family CheY Family MerR Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 4
CheC 0CheV 2CheY 22CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 1NarL 13
NtrC 5OmpR 24PglZ 0PilB 0PleD 2
PleD_VieA 0PrrA 3RpfG 2RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 1VieB 0WcaA 0
Xre 0YcbB 0YesN 1unclassified 2
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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