CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Halothece sp. PCC 7418 (Aphanothece halophytica 7418)
 

Halothece sp. PCC 7418 (Aphanothece halophytica 7418)

Genome
 

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Total size (bp) 4179170
G + C content (%) 42.92
Coding sequences 3708
Coding density (%) 85.05
Average gene length (bp) 959

Histidine domain Logo
Mean spacer hisKA - HATPase domains 61
Min spacer hisKA - HATPase domains 29
Max spacer hisKA - HATPase domains 149
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
70 7 1 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (37 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 16
Histidine Kinase, Hybrid 10
Histidine Kinase, Unorthodox 4
Histidine Kinase, CheA 7
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (51) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family CheB Family PleD_VieA Family PleD Family CheY Family unclassified Family OmpR Family NarL Family CheB Family PleD_VieA Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 0CheV 0CheY 11CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 6
NtrC 0OmpR 12PglZ 0PilB 0PleD 2
PleD_VieA 1PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 18
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 1
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(3)
HisKa 1
Hpt 2

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