CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Geobacter sp. M18
 

Geobacter sp. M18

Genome
 

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Total size (bp) 5277406
G + C content (%) 61.17
Coding sequences 4434
Coding density (%) 86.79
Average gene length (bp) 1033

Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 36
Max spacer hisKA - HATPase domains 89
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
121 45 12 3 Pentad 2
Heptad 1
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (145 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 79
Histidine Kinase, Hybrid 51
Histidine Kinase, Unorthodox 5
Histidine Kinase, CheA 10
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (131) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family YesN Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family PilB Family FrzZ Family Xre Family unclassified Family NtrC Family OmpR Family NarL Family YesN Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family PilB Family FrzZ Family Xre Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 9
CheC 0CheV 1CheY 35CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 4
NtrC 28OmpR 11PglZ 0PilB 1PleD 7
PleD_VieA 5PrrA 0RpfG 6RsbU 2Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 1YcbB 0YesN 1unclassified 18
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

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