CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Frankia sp. EuI1c
 

Frankia sp. EuI1c

Genome
 

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Total size (bp) 8815781
G + C content (%) 72.31
Coding sequences 7083
Coding density (%) 85.95
Average gene length (bp) 1070

Histidine domain Logo
Mean spacer hisKA - HATPase domains 38
Min spacer hisKA - HATPase domains 28
Max spacer hisKA - HATPase domains 119
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
54 49 2 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (76 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 71
Histidine Kinase, Hybrid 5
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (80) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family CyC-C Family RsbU Family AmiR_NasR Family CheY Family TrxB Family IclR Family unclassified Family OmpR Family NarL Family CyC-C Family RsbU Family AmiR_NasR Family CheY Family TrxB Family IclR Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 9CitT 0CsrA 0
CyC-C 1FrzZ 0HalX 0HxlR 0IclR 1
LmbE 0LysR 0LytTR 0MerR 0NarL 39
NtrC 0OmpR 24PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 2Sarp 0
Spo0A 0TrxB 2VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 1
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(2)
HisKa 2
Hpt 0

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