CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Frankia sp. EAN1pec
 

Frankia sp. EAN1pec

Genome
 

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Total size (bp) 8982042
G + C content (%) 71.16
Coding sequences 7191
Coding density (%) 83.64
Average gene length (bp) 1045

Histidine domain Logo
Mean spacer hisKA - HATPase domains 39
Min spacer hisKA - HATPase domains 28
Max spacer hisKA - HATPase domains 129
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
66 33 1 0 0
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TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (65 + 4) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 59
Histidine Kinase, Hybrid 6
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 4
P2CS Predicted Response Regulators (66) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family CyC-C Family RsbU Family AmiR_NasR Family CheY Family unclassified Family OmpR Family NarL Family CyC-C Family RsbU Family AmiR_NasR Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 6CitT 0CsrA 0
CyC-C 1FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 34
NtrC 0OmpR 15PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 8
misPredicted TCS proteins (5)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 4
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(4)
HisKa 4
Hpt 0

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