CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Eubacterium limosum KIST612
 

Eubacterium limosum KIST612

Genome
 

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Total size (bp) 4316707
G + C content (%) 47.5
Coding sequences 4579
Coding density (%) 90.44
Average gene length (bp) 853

Histidine domain Logo
Mean spacer hisKA - HATPase domains 36
Min spacer hisKA - HATPase domains 14
Max spacer hisKA - HATPase domains 61
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
35 35 0 2 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (54 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 46
Histidine Kinase, Hybrid 8
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (55) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family LytTR Family YesN Family RpfG Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family unclassified Family OmpR Family NarL Family LytTR Family YesN Family RpfG Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 1CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 9MerR 0NarL 2
NtrC 0OmpR 32PglZ 0PilB 0PleD 1
PleD_VieA 1PrrA 0RpfG 2RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 3unclassified 3
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(4)
HisKa 2
Hpt 2

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