CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Desulfovibrio vulgaris str. Miyazaki F
 

Desulfovibrio vulgaris str. Miyazaki F

Genome
 

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Total size (bp) 4040304
G + C content (%) 67.11
Coding sequences 3180
Coding density (%) 82.54
Average gene length (bp) 1049

Histidine domain Logo
Mean spacer hisKA - HATPase domains 47
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 129
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
81 29 3 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (72 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 42
Histidine Kinase, Hybrid 24
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 3
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (74) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family CheY Family FrzZ Family AlpA Family VieB Family unclassified Family NtrC Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family CheY Family FrzZ Family AlpA Family VieB Family unclassified Family
AlpA 1AmiR_NasR 0ArsR 0BetR 0CheB 2
CheC 0CheV 3CheY 23CitT 0CsrA 0
CyC-C 0FrzZ 2HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 2MerR 0NarL 3
NtrC 22OmpR 3PglZ 0PilB 0PleD 1
PleD_VieA 1PrrA 0RpfG 3RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 1WcaA 0
Xre 0YcbB 0YesN 0unclassified 7
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 1
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(6)
HisKa 2
Hpt 4

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