CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Desulfovibrio vulgaris DP4
 

Desulfovibrio vulgaris DP4

Genome
 

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Total size (bp) 3462887
G + C content (%) 63.01
Coding sequences 2941
Coding density (%) 85.8
Average gene length (bp) 1010

Histidine domain Logo
Mean spacer hisKA - HATPase domains 43
Min spacer hisKA - HATPase domains 18
Max spacer hisKA - HATPase domains 79
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
65 25 6 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (63 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 36
Histidine Kinase, Hybrid 21
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 3
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (68) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family PleD_VieA Family PleD Family CheY Family FrzZ Family VieB Family unclassified Family NtrC Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family PleD_VieA Family PleD Family CheY Family FrzZ Family VieB Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 2
CheC 0CheV 3CheY 19CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 2MerR 0NarL 2
NtrC 18OmpR 2PglZ 0PilB 0PleD 2
PleD_VieA 1PrrA 0RpfG 4RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 0VieB 1WcaA 0
Xre 0YcbB 0YesN 0unclassified 10
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(2)
HisKa 0
Hpt 2

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