CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Desulfohalobium retbaense DSM 5692
 

Desulfohalobium retbaense DSM 5692

Genome
 

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Total size (bp) 2864304
G + C content (%) 57.54
Coding sequences 2479
Coding density (%) 85.21
Average gene length (bp) 985

Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 40
Max spacer hisKA - HATPase domains 53
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
30 14 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (28 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 16
Histidine Kinase, Hybrid 11
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (32) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family RsbU Family PleD_VieA Family CheY Family TrxB Family unclassified Family NtrC Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family RsbU Family PleD_VieA Family CheY Family TrxB Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 0CheV 0CheY 6CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 1
NtrC 10OmpR 2PglZ 0PilB 0PleD 0
PleD_VieA 1PrrA 0RpfG 2RsbU 1Sarp 0
Spo0A 0TrxB 1VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 6
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 1
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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