CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Desulfovibrio magneticus RS-1
 

Desulfovibrio magneticus RS-1

Genome
 

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Total size (bp) 5248049
G + C content (%) 62.77
Coding sequences 4625
Coding density (%) 87.01
Average gene length (bp) 987

Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 76
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
172 41 8 2 Pentad 1
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (154 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 83
Histidine Kinase, Hybrid 54
Histidine Kinase, Unorthodox 12
Histidine Kinase, CheA 5
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (133) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family PleD_VieA Family PleD Family CheY Family FrzZ Family VieB Family unclassified Family NtrC Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family PleD_VieA Family PleD Family CheY Family FrzZ Family VieB Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 2
CheC 0CheV 7CheY 50CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 2MerR 0NarL 6
NtrC 15OmpR 6PglZ 0PilB 0PleD 6
PleD_VieA 2PrrA 0RpfG 14RsbU 5Sarp 0
Spo0A 0TrxB 0VieA 0VieB 2WcaA 0
Xre 0YcbB 0YesN 0unclassified 15
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(4)
HisKa 0
Hpt 4

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