CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Desulfovibrio gigas DSM 1382 = ATCC 19364
 

Desulfovibrio gigas DSM 1382 = ATCC 19364

Genome
 

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Total size (bp) 3693999
G + C content (%) 63.39
Coding sequences 3268
Coding density (%) 87.89
Average gene length (bp) 994

Histidine domain Logo
Mean spacer hisKA - HATPase domains 41
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 60
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
115 25 10 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (109 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 64
Histidine Kinase, Hybrid 30
Histidine Kinase, Unorthodox 7
Histidine Kinase, CheA 8
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (83) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family PleD_VieA Family PleD Family CheY Family FrzZ Family VieB Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family PleD_VieA Family PleD Family CheY Family FrzZ Family VieB Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 4
CheC 0CheV 2CheY 31CitT 0CsrA 0
CyC-C 0FrzZ 2HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 2MerR 0NarL 2
NtrC 7OmpR 4PglZ 0PilB 0PleD 6
PleD_VieA 1PrrA 1RpfG 5RsbU 2Sarp 0
Spo0A 0TrxB 0VieA 0VieB 1WcaA 0
Xre 0YcbB 0YesN 0unclassified 13
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(3)
HisKa 0
Hpt 3

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