CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Desulfosporosinus acidiphilus SJ4
 

Desulfosporosinus acidiphilus SJ4

Genome
 

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Total size (bp) 4926837
G + C content (%) 42.14
Coding sequences 4431
Coding density (%) 81.23
Average gene length (bp) 903

Histidine domain Logo
Mean spacer hisKA - HATPase domains 40
Min spacer hisKA - HATPase domains 7
Max spacer hisKA - HATPase domains 54
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
45 40 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (60 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 50
Histidine Kinase, Hybrid 5
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (68) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family CheV Family AmiR_NasR Family PleD Family CheY Family YcbB Family Sarp Family CheC Family IclR Family unclassified Family NtrC Family OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family CheV Family AmiR_NasR Family PleD Family CheY Family YcbB Family Sarp Family CheC Family IclR Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 2
CheC 1CheV 1CheY 12CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 1
LmbE 0LysR 0LytTR 2MerR 0NarL 4
NtrC 6OmpR 26PglZ 0PilB 0PleD 2
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 1
Spo0A 2TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 1YesN 2unclassified 4
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

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